rs113447456 chr22:18954564 G>C
- Sequence
gtccagatctgcaggtagatggct[G/C]ggcctgcagggacagaggcggccg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) liver OCI-LY7 (diffuse large B-cell lymphoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.80 | 0.12 | 1.66 | 0.92 | Weak Discordant | |||
| RAD21_HUMAN | 2.50 | -0.03 | 1.58 | n/a | n/a |
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Motif analysis
