rs113452809 chr5:176610261 C>T
- Sequence
cggccggagggagcgagggagggg[C/T]gcccctcgctggccaaccctaact
- ASB in cell types
- Kelly (neuroblastoma) GM19240 (B cells Lymphoblastoid Cell Lines) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.79 | -0.63 | 1.26 | -1.21 | Weak Concordant | |||
| CTCFL_HUMAN | 1.59 | -0.40 | 1.00 | -1.91 | Weak Concordant | |||
| STAG1_HUMAN | 1.87 | -0.55 | 2.17 | n/a | n/a |
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Motif analysis
