rs113588187 chr4:121696962 C>T
- Sequence
ccgagatgcagacgctgaaggatc[C/T]ggcagctgcacctagactgatcca
- ASB in cell types
- CD14+ monocytes 22RV1 (prostate carcinoma) TTC-1240 (Rhabdoid tumor of the kidney) breast tumor
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN ARID2_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.30 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.50 | n/a | 1.88 | n/a | No Hit | |||
| ARID2_HUMAN | -0.87 | 2.34 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.46 | -4.69 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Muscularis, Muscle_Skeletal, Whole_Blood