rs113593439 chr19:14031893 C>T
- Sequence
cgccatgcggggaggcaggggcgc[C/T]cctttctggctgtggccgctgccc
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) foreskin keratinocyte 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.07 | 0.15 | 1.51 | -4.60 | Concordant | |||
| JUN_HUMAN | -3.80 | 1.75 | 2.33 | n/a | No Hit |
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Motif analysis
