rs113638914 chr6:157981676 T>C
- Sequence
aggctcttccgctccacgcccgcc[T/C]gcggggagcctcagccccggggcg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) SUM159PT (Triple negative breast cancer) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- ANDR_HUMAN GABP1_HUMAN MGAP_HUMAN RFOX2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.39 | -0.13 | 2.00 | n/a | No Hit | |||
| GABP1_HUMAN | 2.63 | -2.25 | 1.00 | n/a | n/a | |||
| MGAP_HUMAN | 2.24 | -1.91 | 1.00 | -3.12 | Concordant | |||
| RFOX2_HUMAN | 1.35 | -1.28 | 1.17 | n/a | n/a | |||
| NONO_HUMAN | -1.73 | 2.03 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis