rs113671272 chr2:177392663 G>A
- Sequence
agaatgtgaagctccagacgcatg[G/A]cacccgccgccaagtcgccgcggt
- ASB in cell types
- breast tumor CD14+ monocytes adult erythroblasts U2OS (osteosarcoma)
- ASB for transcription factors
- STAT1_HUMAN RBBP5_HUMAN ESR1_HUMAN MYC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.79 | n/a | 3.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 1.96 | n/a | 2.50 | n/a | n/a | |||
| ESR1_HUMAN | 2.53 | -0.04 | 1.57 | n/a | No Hit | |||
| MYC_HUMAN | 2.53 | -5.39 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid, Uterus