rs113672631 chr11:11841852 G>T
- Sequence
gagccgaggtgactagaagctagc[G/T]acaagtgccggccacctccgacgc
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) breast tumor
- ASB for transcription factors
- SCRT2_HUMAN ANDR_HUMAN ESR1_HUMAN BRD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SCRT2_HUMAN | -2.44 | 2.44 | 1.00 | 0.52 | Weak Concordant | |||
| ANDR_HUMAN | 2.45 | -4.42 | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 2.73 | n/a | 2.00 | n/a | No Hit | |||
| BRD2_HUMAN | -0.06 | 1.00 | 1.29 | n/a | n/a | |||
| MAF_HUMAN | 1.94 | -0.65 | 2.00 | n/a | No Hit |
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Motif analysis
