rs113704683 chr2:61538854 T>C
- Sequence
ggcgcgcggcagcgttctctttgc[T/C]tcccccggactcggccggcccgcc
- ASB in cell types
- K562 (myelogenous leukemia) monocytes from periferal blood 22RV1 (prostate carcinoma)
- ASB for transcription factors
- NELFA_HUMAN ANDR_HUMAN RFOX2_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NELFA_HUMAN | 2.08 | -0.18 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.51 | -4.41 | 1.75 | -1.07 | Weak Concordant | |||
| RFOX2_HUMAN | 1.55 | -4.17 | 2.00 | n/a | n/a | |||
| HDAC2_HUMAN | 2.28 | -0.12 | 2.00 | n/a | n/a | |||
| SRBP2_HUMAN | 2.44 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid