rs113708222 chr1:203795675 C>T
- Sequence
tttgacgctggcagtcttggtttt[C/T]tgctagtgctgctgctgctgggag
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) adult erythroblasts neural cell LNCaP (prostate carcinoma)
- ASB for transcription factors
- SPT5H_HUMAN BRD4_HUMAN RBBP5_HUMAN TBP_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 2.05 | -1.20 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 2.31 | 0.71 | 1.00 | n/a | n/a | |||
| RBBP5_HUMAN | 2.49 | n/a | 2.00 | n/a | n/a | |||
| TBP_HUMAN | 0.84 | -0.18 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid