rs113708952 chr19:45091745 A>C
- Sequence
ggcgaaagtgcggcggcgaatgtc[A/C]agcgttgggtctgagcctaggggt
- ASB in cell types
- CD4+ T-cells monocytes from periferal blood SUM159PT (Triple negative breast cancer) adult erythroblasts
- ASB for transcription factors
- BCL6_HUMAN HCFC1_HUMAN SRBP2_HUMAN SMAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL6_HUMAN | 2.21 | -0.04 | 1.67 | n/a | No Hit | |||
| HCFC1_HUMAN | 1.81 | n/a | 3.00 | n/a | n/a | |||
| SRBP2_HUMAN | 2.29 | n/a | 3.00 | n/a | No Hit | |||
| SMAD3_HUMAN | -1.50 | 1.98 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.48 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood