rs113748851 chr1:25430730 T>C
- Sequence
acactataatgattggcgcattct[T/C]ccgtccttcaaaggggcgggttct
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor
- ASB for transcription factors
- PKNX1_HUMAN ARI1B_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -0.25 | 0.25 | 1.00 | 1.30 | Weak Concordant | |||
| ARI1B_HUMAN | 2.74 | -2.62 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.58 | -1.59 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood