rs113837172 chr19:52690616 G>A
- Sequence
tgcggtttagaaccggcagagggc[G/A]gggccggggcgggacctgtgtgtc
- ASB in cell types
- neural cell GBM39 (Human brain tumor) bipolar neuron pancreas
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN CTCFL_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.47 | 2.55 | 1.60 | -1.15 | Weak Discordant | |||
| SMC3_HUMAN | -2.25 | 2.14 | 1.33 | n/a | n/a | |||
| CTCFL_HUMAN | -1.10 | 1.90 | 1.00 | -2.20 | Discordant | |||
| STAT1_HUMAN | 1.60 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Lung, Nerve_Tibial, Thyroid