rs113869562 chr1:145281127 G>A
- Sequence
ggtgcaaaagctcatacttacctg[G/A]aaggggagataccatgatcacgaa
- ASB in cell types
- HeLa (cervical adenocarcinoma) HeLa-LTR-Luciferase cells 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ELL2_HUMAN INT11_HUMAN AFF4_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELL2_HUMAN | 2.57 | -4.84 | 2.00 | n/a | n/a | |||
| INT11_HUMAN | 1.58 | -0.83 | 1.88 | n/a | n/a | |||
| AFF4_HUMAN | 1.60 | -0.80 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | 2.38 | 0.53 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood