rs1143726 chr1:45134668 G>C

Sequence
aatcatttccttctttttggttta[G/C]attggaaaaaagcatgatgctgaa
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
RXRB_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RXRB_HUMAN -2.34 2.73 1.003.2·10-3 1.00 n/a No Hit
FOXA2_HUMAN -1.28 1.32 1.000.04 1.28 4.29 Concordant
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Motif analysis

FOXA2_HUMAN Concordant
FOXA2_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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