rs114817585 chr1:161612689 A>G
- Sequence
tcatacgctttgcttatcttatat[A/G]tagatttctaaaattccaaaccgg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- EGR1_HUMAN MEF2D_HUMAN KDM1A_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 2.18 | -0.88 | 2.00 | n/a | No Hit | |||
| MEF2D_HUMAN | 2.84 | n/a | 3.00 | -2.53 | Concordant | |||
| KDM1A_HUMAN | 1.60 | -3.43 | 1.67 | n/a | n/a | |||
| MNT_HUMAN | 1.41 | -0.87 | 2.33 | n/a | No Hit |
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Motif analysis
