rs1148473 chr1:12133470 C>G

Sequence
aaagaatgtgcctcggccgggtgc[C/G]gtggctcacgcctgtaatcccagc
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
ATF2_HUMAN ATF7_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN 2.57 -2.39 2.7·10-81.00 1.00 n/a No Hit
ATF7_HUMAN 3.06 -2.75 1.9·10-41.00 1.00 n/a No Hit
CREB1_HUMAN 2.31 -2.00 2.5·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Cerebellum,  Skin_Sun_Exposed_Lower_leg

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