rs115521489 chr1:205750385 A>G
- Sequence
tcaccgtgggggtcctgttagtca[A/G]gatgctctgagagcgcacggccgc
- ASB in cell types
- adult erythroblasts HCT-116 (colon carcinoma) CD14+ monocytes hMADS-3 (adipose-derived stem cells)
- ASB for transcription factors
- HCFC1_HUMAN STAT1_HUMAN SP1_HUMAN KLF11_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 2.39 | -4.23 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 3.02 | n/a | 3.00 | n/a | No Hit | |||
| SP1_HUMAN | 0.25 | 2.66 | 1.00 | n/a | No Hit | |||
| KLF11_HUMAN | -0.84 | 1.98 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid