rs11555935 chr11:6481550 C>A
- Sequence
cagcagcagcagcaacagcaactg[C/A]gaaacgtaagtgagaactaagtcg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) monocytes from periferal blood tibial nerve
- ASB for transcription factors
- ANDR_HUMAN SRBP2_HUMAN CTCF_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.95 | -0.13 | 1.67 | n/a | No Hit | |||
| SRBP2_HUMAN | 2.27 | -3.42 | 2.50 | n/a | No Hit | |||
| CTCF_HUMAN | 1.70 | 0.71 | 1.12 | n/a | No Hit | |||
| FOXK2_HUMAN | -3.54 | 1.46 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood