rs11582514 chr1:183023026 T>C

Sequence
gcggagcccaaggaccccagcgac[T/C]cccgcgcggggagcgggtctgcga
ASB in cell types
BEAS-2B (bronchial epithelium) HEK293 (embryonic kidney) HeLa (cervical adenocarcinoma) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
GCR_HUMAN INT11_HUMAN IKZF2_HUMAN CRTC2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 1.66 0.45 6.0·10-91.00 1.00 n/a No Hit
INT11_HUMAN 2.58 -3.67 9.5·10-71.00 2.00 n/a n/a
IKZF2_HUMAN 2.42 -0.67 2.9·10-31.00 1.00 n/a n/a
CRTC2_HUMAN 2.16 -4.72 8.0·10-31.00 2.00 n/a n/a
TYY1_HUMAN 1.23 0.25 0.031.00 1.70 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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