rs11583187 chr1:19427353 G>A

Sequence
ttaagttcatcaagaccttcactc[G/A]tttacattcccgagaggcttagca
ASB in cell types
HepG2 (hepatoblastoma) breast tumor
ASB for transcription factors
BCL6_HUMAN TEAD3_HUMAN RARA_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BCL6_HUMAN 3.56 n/a 1.8·10-91.00 1.50 n/a No Hit
TEAD3_HUMAN 4.19 -4.53 7.3·10-91.00 1.00 n/a No Hit
RARA_HUMAN 3.11 n/a 2.2·10-61.00 1.50 n/a No Hit
FOXA2_HUMAN 2.82 -2.08 1.3·10-51.00 1.42 1.75 Weak Discordant
FOXA1_HUMAN 1.52 0.01 2.7·10-31.00 2.00 -0.91 Weak Concordant
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Motif analysis

FOXA2_HUMAN Weak Discordant
FOXA2_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  biploar disorder (bipolar schizoaffective disorder)
GTEx eQTL Adrenal_Gland,  Colon_Sigmoid,  Esophagus_Muscularis,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Stomach

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