rs11584240 chr1:16905197 G>A
- Sequence
ctgtggcggggcggaagttcacat[G/A]tgtggtatgtagagcacatgttat
- ASB in cell types
- HEK293 (embryonic kidney) liver HCT-116 (colon carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- TYY1_HUMAN SETD7_HUMAN SMAD2_HUMAN ZXDB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 0.14 | 2.05 | 1.68 | n/a | No Hit | |||
| SETD7_HUMAN | -2.49 | 2.71 | 1.17 | n/a | n/a | |||
| SMAD2_HUMAN | -0.17 | 2.71 | 1.75 | n/a | No Hit | |||
| ZXDB_HUMAN | n/a | 2.34 | 2.00 | n/a | n/a | |||
| ZN189_HUMAN | n/a | 3.34 | 2.00 | n/a | No Hit |
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Motif analysis
