rs11700272 chr20:62937779 A>G
- Sequence
cccgtgcggcctcacgcaaacgac[A/G]ggaaaaaagctgggaccttcgcct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NELFA_HUMAN TIF1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NELFA_HUMAN | 2.44 | -3.06 | 2.00 | n/a | n/a | |||
| TIF1B_HUMAN | 2.34 | -1.38 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid