rs11702929 chr22:29797609 T>C
- Sequence
ttggcacccacttcccagggctga[T/C]gtgagaaagaaatgacatgtcgaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM01310 ( Transformed lymphovlasoid cell line ) macrophages form periferal blood
- ASB for transcription factors
- AHR_HUMAN IKZF2_HUMAN MEF2B_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AHR_HUMAN | -2.53 | 3.48 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -2.89 | 1.97 | 1.50 | n/a | n/a | |||
| MEF2B_HUMAN | n/a | 3.00 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | -4.57 | 2.60 | 1.50 | 0.11 | Weak Concordant | |||
| SKIL_HUMAN | -2.23 | 2.61 | 1.00 | n/a | n/a |
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Motif analysis
