rs11706726 chr3:113830804 C>T
- Sequence
tacctaaccatagtacaattataa[C/T]aaacaggaaattgtatgggcatgg
- ASB in cell types
- HepG2 (hepatoblastoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) GM12878 (female B-cells lymphoblastoid cell line) macrophages form periferal blood
- ASB for transcription factors
- TEAD3_HUMAN TF65_HUMAN CREB1_HUMAN RARA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD3_HUMAN | 3.19 | -2.99 | 1.00 | n/a | No Hit | |||
| TF65_HUMAN | 0.65 | 1.53 | 1.75 | n/a | No Hit | |||
| CREB1_HUMAN | 1.53 | -0.12 | 1.00 | n/a | No Hit | |||
| RARA_HUMAN | 1.73 | -3.12 | 1.33 | n/a | No Hit | |||
| ELF3_HUMAN | 1.93 | -0.06 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Uterus, Whole_Blood