rs11709127 chr3:20186517 T>C

Sequence
tttcttcagtctgacagcttcaaa[T/C]gtcccgggttgtgctcaaagcctc
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 2.13 1.02 5.7·10-31.00 2.10 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  rheumatoid arthritis
GTEx eQTL Artery_Aorta,  Lung,  Nerve_Tibial,  Ovary,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Thyroid,  Uterus

Download