rs11710561 chr3:112327619 G>A

Sequence
gtcgctgtatctctaggtcacaga[G/A]tatgtgtgaaccaatacttcattt
ASB in cell types
A549 (lung carcinoma) foreskin keratinocyte GM12890 (Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 0.45 -0.34 4.6·10-61.00 1.00 n/a n/a
RAD21_HUMAN 1.08 0.66 0.040.88 1.74 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Colon_Sigmoid,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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