rs11711695 chr3:161339805 A>G
- Sequence
cagcagagaaactggatcccagag[A/G]agtgaagtcacttgtccaaggcca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line) MCF7 WS8 cells LY-2 (invasive ductal carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN GATA3_HUMAN GCR_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.02 | 2.38 | 2.30 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.16 | 1.67 | 2.06 | n/a | No Hit | |||
| GATA3_HUMAN | 0.11 | 2.48 | 3.12 | n/a | No Hit | |||
| GCR_HUMAN | -5.21 | 2.67 | 2.67 | n/a | No Hit | |||
| FOXM1_HUMAN | -0.75 | 2.62 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus