rs11713195 chr3:57597790 A>G
- Sequence
ccctcttctattacggtacgcgcg[A/G]tgggtattccctgatgccatgaac
- ASB in cell types
- breast tumor GM12878 (female B-cells lymphoblastoid cell line) monocyte-derived macrophages from peripheral blood MDM(monocyte derived macrophages)
- ASB for transcription factors
- ESR1_HUMAN SPI1_HUMAN FOXK2_HUMAN RBBP5_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.10 | n/a | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.67 | -0.42 | 1.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.86 | -0.03 | 2.25 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.20 | n/a | 3.00 | n/a | n/a | |||
| TF65_HUMAN | 2.02 | -0.66 | 2.25 | 0.43 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood