rs117142159 chr2:196068435 G>C
- Sequence
cattagcactctgggggtgctctg[G/C]gctgtggctccccctgctggcgcg
- ASB in cell types
- HepG2 (hepatoblastoma) THP-1 (acute monocytic leukemia) GM18526 (B – cells Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN OLIG2_HUMAN FOXK2_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.35 | 1.27 | 1.40 | n/a | No Hit | |||
| OLIG2_HUMAN | 1.21 | 2.39 | 1.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.94 | -3.73 | 1.50 | n/a | No Hit | |||
| RAD21_HUMAN | 0.89 | 0.47 | 1.10 | n/a | n/a |
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