rs11714980 chr3:167735203 T>C
- Sequence
taggccccgcaggcgcctcaccca[T/C]tgagggggcgggctgacagagcag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells GM01310 ( Transformed lymphovlasoid cell line )
- ASB for transcription factors
- RBM25_HUMAN BRD4_HUMAN AHR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 0.86 | 2.99 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.46 | 0.97 | 1.17 | n/a | n/a | |||
| AHR_HUMAN | -0.53 | 1.52 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid