rs117169805 chr12:58920327 C>A
- Sequence
cttccagccgagggtgcacgcccg[C/A]cctcgcggtcgcgtgcgcgctcct
- ASB in cell types
- breast tumor GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ESR1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.90 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.33 | 1.79 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Transverse, Minor_Salivary_Gland, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid