rs11717138 chr3:156816839 T>C

Sequence
acgtttcgcagcctgaggtgtttg[T/C]tgtatatcgggaactgacactttt
ASB in cell types
HEK293 (embryonic kidney) GM19239 (male B-cells lymphoblastoid cell line) breast tumor
ASB for transcription factors
STAG1_HUMAN ZBT26_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 0.35 1.23 1.000.03 1.00 n/a n/a
ZBT26_HUMAN -1.20 1.20 1.000.03 1.00 n/a No Hit
ESR1_HUMAN -1.46 2.50 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI nose size
GRASP parkinsons disease,  triglycerides change with statins,  type 2 diabetes,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Testis,  Thyroid

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