rs11717415 chr3:186965312 T>G
- Sequence
ttgactcataatctctaatgcggg[T/G]gtgggggacttcctgccaaatgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- EGR1_HUMAN IKZF2_HUMAN EP300_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | n/a | 3.74 | 1.00 | 5.85 | Concordant | |||
| IKZF2_HUMAN | -1.39 | 1.72 | 1.00 | n/a | n/a | |||
| EP300_HUMAN | -3.19 | 2.87 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | -2.99 | 3.05 | 1.00 | n/a | No Hit | |||
| NFAC3_HUMAN | -2.41 | 2.65 | 1.00 | n/a | No Hit |
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Motif analysis
