rs11718128 chr3:15557752 G>A
- Sequence
tcaagccctctacaccacctaatg[G/A]caaaatcttatattgcattcggct
- ASB in cell types
- GM19193 (female B-cells Lymphoblastoid Cell Lines) liver D54 (H54, Human glioblastoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.01 | 0.29 | 1.51 | -2.97 | Concordant | |||
| STAG1_HUMAN | 1.42 | -1.19 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.62 | -0.33 | 1.64 | n/a | n/a |
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Motif analysis
