rs11718493 chr3:126529005 C>T
- Sequence
gcttgctggggcctggctgccctg[C/T]ttatctcctcttgcaacactgtaa
- ASB in cell types
- HepG2 (hepatoblastoma) pancreas adrenal gland iPSC-derived cardiomyocytes
- ASB for transcription factors
- CTCF_HUMAN SP130_HUMAN MAX_HUMAN TBX5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.90 | 0.74 | 1.33 | n/a | No Hit | |||
| SP130_HUMAN | 3.03 | -2.69 | 1.00 | n/a | n/a | |||
| MAX_HUMAN | 2.33 | -1.89 | 1.00 | n/a | No Hit | |||
| TBX5_HUMAN | 2.13 | -1.64 | 1.00 | n/a | No Hit | |||
| MNT_HUMAN | 2.15 | -0.56 | 1.17 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood