rs117204966 chr19:49036946 T>C

Sequence
actggccctggggactgggtgacg[T/C]cagggatgagcctcttgtgattgg
ASB in cell types
K562 (myelogenous leukemia) RWPE2 HeLa S3 (cervical adenocarcinoma) EOL-1 (Acute myeloid leukemia)
ASB for transcription factors
CTCF_HUMAN KDM1A_HUMAN CTBP1_HUMAN LEF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.26 -0.60 2.8·10-201.00 2.08 n/a No Hit
KDM1A_HUMAN 1.73 n/a 6.8·10-71.00 3.00 n/a n/a
CTBP1_HUMAN 1.83 n/a 2.2·10-41.00 2.00 n/a n/a
LEF1_HUMAN 1.63 n/a 3.0·10-41.00 2.00 n/a No Hit
HDAC1_HUMAN 2.33 -3.83 6.6·10-41.00 2.00 n/a n/a
Items per page:
1 – 5 of 7

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

Download