rs117211470 chr14:34714682 C>G
- Sequence
cagcccgagggaggtggcggggct[C/G]ggcgggccgcaggcagcgggcggg
- ASB in cell types
- BEAS-2B (bronchial epithelium) A549 (lung carcinoma) breast tumor 22RV1 (prostate carcinoma)
- ASB for transcription factors
- GCR_HUMAN TYY1_HUMAN ESR1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.25 | -0.28 | 1.00 | n/a | No Hit | |||
| TYY1_HUMAN | 0.21 | 2.80 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 3.01 | n/a | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.38 | 0.01 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.01 | -5.41 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Whole_Blood