rs117218125 chr15:88621350 C>G

Sequence
gagctgccggctttccggacgcca[C/G]gtgcagaccggaagagacacgcgg
ASB in cell types
HEK293 (embryonic kidney) HEK293T (embryonic kidney) HepG2 (hepatoblastoma)
ASB for transcription factors
LMBL2_HUMAN GLIS2_HUMAN PKNX1_HUMAN RBM25_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
LMBL2_HUMAN 2.03 -2.03 3.8·10-71.00 1.00 n/a n/a
GLIS2_HUMAN 2.52 n/a 4.1·10-31.00 2.00 n/a No Hit
PKNX1_HUMAN 2.14 -1.58 0.051.00 1.00 n/a No Hit
RBM25_HUMAN 0.61 0.36 0.051.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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