rs11722522 chr4:10461487 C>A
- Sequence
gctgcgagcccggctggcccagct[C/A]ggcgtgtagagctctaccccgcgc
- ASB in cell types
- neutrophils from periferal blood 2588 (Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line) LNCaP (prostate carcinoma)
- ASB for transcription factors
- STAG1_HUMAN RAD21_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.97 | -0.46 | 1.08 | n/a | n/a | |||
| RAD21_HUMAN | 2.95 | 0.81 | 1.20 | n/a | n/a | |||
| IKZF1_HUMAN | -1.55 | 1.83 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid