rs11723258 chr4:153811918 T>C
- Sequence
ttgtaagaaacttgtggtgccccc[T/C]gtggactggtgaataggctaattc
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.22 | 0.30 | 1.27 | -2.90 | Concordant |
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Motif analysis
Genetic associations
GRASP alzheimers disease, diabetic retinopathy in type 2 diabetes mellitus, hypertension (early onset hypertension), ldl cholesterol, ldl cholesterol change with statins
GTEx eQTL Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis