rs117232924 chr9:34403813 C>T
- Sequence
tccagagggtaaggatgggaagga[C/T]ctttacagctactgtgactcactt
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) adipose
- ASB for transcription factors
- TF65_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.75 | n/a | 2.50 | n/a | No Hit | |||
| PPARG_HUMAN | 2.73 | n/a | 2.50 | 1.47 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood