rs117240154 chr17:20165231 T>G
- Sequence
cgccctgacaggccccagtgtgtg[T/G]tgttccccccaccccctgtgccgt
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.54 | n/a | 2.00 | 2.32 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Colon_Transverse, Esophagus_Mucosa, Lung, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Vagina, Whole_Blood