rs117272072 chr19:27271594 C>T
- Sequence
agttgatcctttcttttgaaagag[C/T]cattttgacacacactttttgtag
- ASB in cell types
- HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CENPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CENPA_HUMAN | n/a | 1.16 | 4.67 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Heart_Atrial_Appendage, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid