rs117299139 chr16:4402790 C>T
- Sequence
ccggctcatcaggctcaaccatgc[C/T]gggagtcaggagcgcagcaggccg
- ASB in cell types
- hepatocytes A549 (lung carcinoma) hTERT-HME1(Telomerase immortalized cell line)
- ASB for transcription factors
- CTCF_HUMAN BRCA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.19 | 0.62 | 1.54 | n/a | No Hit | |||
| BRCA2_HUMAN | -0.87 | 2.16 | 1.00 | n/a | n/a |
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