rs11730502 chr4:4335453 G>A
- Sequence
cctctagtggccctgtctgggcgt[G/A]acagagggctcacactcttctgat
- ASB in cell types
- A549 (lung carcinoma) HCT-116 (colon carcinoma) fibroblast of pulmonary artery adult erythroblasts
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN JUN_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.78 | 0.15 | 1.10 | n/a | n/a | |||
| CTCF_HUMAN | 1.11 | 0.49 | 1.24 | n/a | No Hit | |||
| JUN_HUMAN | 1.18 | -0.43 | 1.75 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.68 | n/a | 3.00 | n/a | n/a | |||
| SMC1A_HUMAN | 2.14 | -1.52 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood