rs11731333 chr4:42657521 G>C

Sequence
gaaagagctgttgggtctgagccg[G/C]caggcgaaggcgaaagggtctggg
ASB in cell types
K562 (myelogenous leukemia) Peyer's patch pancreas CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
CTCF_HUMAN JUN_HUMAN STAT1_HUMAN CDN1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.78 1.46 1.001.2·10-7 1.04 0.64 Weak Concordant
JUN_HUMAN 1.07 0.24 0.021.00 1.41 n/a No Hit
STAT1_HUMAN 1.87 0.32 0.041.00 1.50 n/a No Hit
CDN1B_HUMAN 1.49 -0.39 0.050.97 1.75 n/a n/a
TBX21_HUMAN -0.11 1.44 1.000.05 1.00 n/a No Hit
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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