rs117358491 chr19:54115901 T>C
- Sequence
gtctttacagcttggtttttgttt[T/C]tttgttgtttgtttgttttgagac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXK2_HUMAN KDM5A_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.01 | -0.55 | 1.25 | 1.00 | Weak Discordant | |||
| KDM5A_HUMAN | 1.18 | -1.18 | 1.00 | n/a | n/a | |||
| TYY1_HUMAN | 2.41 | -1.65 | 2.00 | n/a | No Hit |
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Motif analysis
