rs117374538 chr20:51833586 G>T
- Sequence
ggaggaacatggcttggcaattaa[G/T]agtctctatttgttttctggggct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GRHL2_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.31 | 1.95 | 3.21 | n/a | No Hit | |||
| ESR1_HUMAN | 0.39 | 1.36 | 3.70 | n/a | No Hit | |||
| GRHL2_HUMAN | -3.36 | 1.74 | 2.95 | n/a | No Hit | |||
| SMCA4_HUMAN | 0.08 | 1.87 | 3.14 | n/a | n/a | |||
| ARI1A_HUMAN | 0.49 | 1.66 | 3.00 | 0.62 | Weak Concordant |
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Motif analysis
