rs11738344 chr5:392507 A>G

Sequence
gggcgaggtgggtgcagatgtggc[A/G]ggtgcagacgcggcgtccacagcc
ASB in cell types
MV-4-11 (Childhood acute monocytic leukemia)
ASB for transcription factors
BRD4_HUMAN TF65_HUMAN CDK9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 1.92 0.23 1.7·10-31.00 1.00 n/a n/a
TF65_HUMAN 1.70 -0.53 0.011.00 2.00 n/a No Hit
CDK9_HUMAN 1.84 0.55 0.031.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Coronary,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach

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