rs11738809 chr5:135642144 G>A

Sequence
tcaaattggtttggaccttcgcac[G/A]cttgggggccagttctgacatcta
ASB in cell types
ZR-75-1 (invasive ductal carcinoma) iPS-derived dermal fibroblasts
ASB for transcription factors
RARA_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN 2.37 -2.13 1.0·10-41.00 1.00 n/a No Hit
FOXA1_HUMAN 1.79 -0.08 1.9·10-41.00 1.71 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  ldl cholesterol,  tetrology of fallot,  transmission distortion,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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